miRBase entry: osa-MIR1883b

Stem-loop osa-MIR1883b


Accession
MI0008301
Description
Oryza sativa osa-MIR1883b precursor miRNA
Gene family
MIPF0000683; MIR1883

Literature search
3 open access papers mention osa-MIR1883b
(3 sentences)

Sequence

104 reads, 83 reads per million, 2 experiments
cgguugcagcccgucacagguaucuagucACCUGUGACGGGCCGAGAAUGGAAuccgucaaaggaacacaccuuugucagauucuacuuccugcccaucacaggugacuagauaccugugacgggccgcaacuuac
.((((((.(((((((((((((((((((((((((((((.((((.(.((((((((((.(.((((((......)))))).).))))))).)))).)))).))))))))))))))))))))))))))))).))))))...

Structure
--c      a                             C    C A   -       c u      aa 
   gguugc gcccgucacagguaucuagucACCUGUGA GGGC G GAA UGGAAuc g caaagg  c
   |||||| ||||||||||||||||||||||||||||| |||| | ||| ||||||| | ||||||   
   ucaacg cgggcaguguccauagaucaguggacacu cccg c cuu aucuuag c guuucc  a
cau      c                             a    u -   c       a u      ac 


Annotation confidence Not enough data
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Genome context
Chr11: 9367993-9368128 [-]

Database links

Mature osa-miR1883b

Accession MIMAT0007852
Description Oryza sativa osa-miR1883b mature miRNA
Sequence 30 - ACCUGUGACGGGCCGAGAAUGGAA - 53
Evidence experimental
454 [1]
Database links

References

  1. PubMed ID: 18687877
    A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
    "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
    "Genome Res (2008) 18:1456-1465