miRBase entry: ath-MIR1886

Stem-loop ath-MIR1886


Accession
MI0008303
Description
Arabidopsis thaliana ath-MIR1886 precursor miRNA

Literature search
1 open access papers mention ath-MIR1886
(2 sentences)

Sequence

gagUGAGAGAAGUGAGAUGAAAUCUUUGAUUGGaaauuucauguagacgaugcuaucaccccauaugaccaaaagaaauucccAAUUAAAGAUUUCAUCUUACUucccucaug
..(((((.(((((((((((((((((((((((((.((((((.........(((.........)))..........)))))).))))))))))))))))))))))))).))))).

Structure
ga     A                         a      -auguagacg   cua 
  gUGAG GAAGUGAGAUGAAAUCUUUGAUUGG aauuuc          aug   u
  ||||| ||||||||||||||||||||||||| ||||||          |||   c
  uacuc cuUCAUUCUACUUUAGAAAUUAAcc uuaaag          uac   a
-g     c                         c      aaaaccagua   ccc 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr2: 15611870-15611982 [+]

Database links

Mature ath-miR1886.1

Accession MIMAT0007853
Description Arabidopsis thaliana ath-miR1886.1 mature miRNA
Sequence 4 - UGAGAGAAGUGAGAUGAAAUC - 24
Evidence experimental
PARE [1]

Mature ath-miR1886.2

Accession MIMAT0012129
Description Arabidopsis thaliana ath-miR1886.2 mature miRNA
Sequence 13 - UGAGAUGAAAUCUUUGAUUGG - 33
Evidence experimental
Illumina [2]

Mature ath-miR1886.3

Accession MIMAT0013773
Description Arabidopsis thaliana ath-miR1886.3 mature miRNA
Sequence 84 - AAUUAAAGAUUUCAUCUUACU - 104
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 18542052
    Global identification of microRNA-target RNA pairs by parallel analysis of RNA ends
    "German MA, Pillay M, Jeong DH, Hetawal A, Luo S, Janardhanan P, Kannan V, Rymarquis LA, Nobuta K, German R, De Paoli E, Lu C, Schroth G, Meyers BC, Green PJ"
    "Nat Biotechnol (2008) 26:941-946

  2. PubMed ID: 19307293
    Computational and analytical framework for small RNA profiling by high-throughput sequencing
    "Fahlgren N, Sullivan CM, Kasschau KD, Chapman EJ, Cumbie JS, Montgomery TA, Gilbert SD, Dasenko M, Backman TW, Givan SA, Carrington JC"
    "RNA (2009) 15:992-1002