Stem-loop sequence mmu-mir-1894

Accession

MI0008326 (change log)

Symbol

MGI:Mir1894

Description

Mus musculus miR-1894 stem-loop

Literature search

2 open access papers mention mmu-mir-1894
(39 sentences)

Stem-loop

   ucuuu   cu       cuac     g -     c      g 
5'      guu  cucuccc    caccu c cucuu ccugcu u
        |||  |||||||    ||||| | ||||| ||||||  
3'      cga  gggaggg    guggg g gggaa ggacga g
   --gac   cc       --aa     a a     c      g 

Deep sequencing

15 reads, 33.3 reads per million, 12 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr17: 35917889-35917969 [+]
• Overlapping transcripts:

  sense

  OTTMUST00000049786 ; Ppp1r10-001; intron 2

  OTTMUST00000049790 ; Ppp1r10-002; exon 2

  OTTMUST00000049793 ; Ppp1r10-005; intron 2

  ENSMUST00000087210 ; Ppp1r10-201; intron 1

  ENSMUST00000087211 ; Ppp1r10-001; intron 2

  ENSMUST00000133641 ; Ppp1r10-002; exon 2

  ENSMUST00000151664 ; Ppp1r10-005; intron 2

Database links

• EntrezGene:Mir1894
• MGI:Mir1894
• miRBase Tracker:MI0008326

Mature sequence mmu-miR-1894-5p

• Accession: MIMAT0007877
• Sequence: 11 - cucuccccuaccaccugccucu - 32
• Deep sequencing: 1 reads, 1 experiments
• Evidence: experimental; microarray [1], PCR [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-1894-5p
  • miRDB:mmu-miR-1894-5p
  • microrna.org:mmu-miR-1894-5p

Mature sequence mmu-miR-1894-3p

• Accession: MIMAT0007878
• Sequence: 50 - gcaagggagagggugaagggag - 71
• Deep sequencing: 10 reads, 9 experiments
• Evidence: experimental; microarray [1], PCR [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-1894-3p
  • miRDB:mmu-miR-1894-3p
  • microrna.org:mmu-miR-1894-3p

References

1. PMID:18492288 "MicroRNA-encoding long non-coding RNAs" He S, Su H, Liu C, Skogerbo G, He H, He D, Zhu X, Liu T, Zhao Y, Chen R BMC Genomics. 9:236(2008).