Stem-loop sequence bmo-mir-13a

Accession

MI0008341 (change log)

Description

Bombyx mori miR-13a stem-loop

Gene family

MIPF0000049; mir-2

Literature search

6 open access papers mention bmo-mir-13a
(23 sentences)

Stem-loop

   gauaauc      c        c   g    a   ucucc 
5'        ucgauc ugucaaag ggc guga aug     u
          |||||| |||||||| ||| |||| |||      
3'        ggcugg guaguuuc ccg cacu uac     c
   ---auuu      u        a   a    a   uuucc 

Deep sequencing

114 reads, 0 reads per million, 3 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (ASM15162v1; GCA_000151625.1): NW_004582015.1: 7692416-7692494 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from bmo-mir-13a

• bmo-mir-2a-1: NW_004582015.1: 7692561-7692650 [-]
• bmo-mir-13a: NW_004582015.1: 7692416-7692494 [-]
• bmo-mir-13b: NW_004582015.1: 7692288-7692367 [-]
• bmo-mir-2a-2: NW_004582015.1: 7692153-7692232 [-]
• bmo-mir-2b: NW_004582015.1: 7692030-7692105 [-]

Database links

• miRBase Tracker:MI0008341

Mature sequence bmo-miR-13a-5p

• Accession: MIMAT0007896
• Previous IDs: bmo-miR-13a*
• Sequence: 13 - ccugucaaagcggcggugaaa - 33
• Deep sequencing: 2 reads, 1 experiments
• Evidence: experimental; Northern [1]

Mature sequence bmo-miR-13a-3p

• Accession: MIMAT0007897
• Previous IDs: bmo-miR-13a
• Sequence: 50 - uaucacagccacuuugaugug - 70
• Deep sequencing: 112 reads, 3 experiments
• Evidence: experimental; Illumina [2]
• Database links:
  • RNAcentral:URS00003902CD_7091

References

1. PMID:18507836 "Identification and characteristics of microRNAs from Bombyx mori" He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X, Jin Y, Zhang Y BMC Genomics. 9:248(2008).
2. PMID:20199675 "MicroRNAs of Bombyx mori identified by Solexa sequencing" Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q BMC Genomics. 11:148(2010).