miRBase entry: sly-MIR1919b

Stem-loop sly-MIR1919b


Accession
MI0008355
Description
Solanum lycopersicum sly-MIR1919b precursor miRNA
Gene family
MIPF0000582; MIR1919

Literature search
5 open access papers mention sly-MIR1919b
(14 sentences)

Sequence

gccuuugauguucacaucuuccgguaguccugucgcagaugacuuucgcccauuuauggaaccacacuuucuuuaauuugaauucuaugugguaggACGAGAGUCAUCUGUGACAGGauaauggaagaucgaguuaucaaaggc
((((((((((.....((((((((...((((((((((((((((((((((((..........((((((..(((........))).....)))))).)).))))))))))))))))))))))..)))))))).....))))))))))

Structure
          uucac        gua                      -  cauuuaugga      ---cu   uuu 
gccuuugaug     aucuuccg   guccugucgcagaugacuuucg cc          accaca     uuc   a
||||||||||     ||||||||   |||||||||||||||||||||| ||          ||||||     |||    
cggaaacuau     uagaaggu   uaGGACAGUGUCUACUGAGAGC gg          uggugu     aag   a
          ugagc        -aa                      A  ---------a      aucuu   uuu 


Annotation confidence Not enough data
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Genome context
chr8: 56580749-56580892 [+]

Database links

Mature sly-miR1919b

Accession MIMAT0007912
Description Solanum lycopersicum sly-miR1919b mature miRNA
Sequence 97 - ACGAGAGUCAUCUGUGACAGG - 117
Evidence experimental
454 [1]

References

  1. PubMed ID: 18653800
    Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening
    "Moxon S, Jing R, Szittya G, Schwach F, Rusholme Pilcher RL, Moulton V, Dalmay T"
    "Genome Res (2008) 18:1602-1609