miRBase entry: sly-MIR160a

Stem-loop sly-MIR160a


Accession
MI0008357
Description
Solanum lycopersicum sly-MIR160a precursor miRNA
Gene family
MIPF0000032; MIR160

Literature search
26 open access papers mention sly-MIR160a
(106 sentences)

Sequence

caagucguguacacguauaUGCCUGGCUCCCUGUAUGCCAuuugcaaagcucaccguaauauaucgaugggccuuguugaauggcguaugaggagccaagcauauuccgauaucguguauaugauguug
...((((((((((((.((((((.(((((((.((((((((((((((((.(((((.((........)).))))).))).))))))))))))).))))))).))))))........))))))))))))....

Structure
-caa            -------u      C       C             -   a     c  uaa 
    gucguguacacg        auaUGC UGGCUCC UGUAUGCCAuuug caa gcuca cg   u
    ||||||||||||        |||||| ||||||| ||||||||||||| ||| ||||| ||    
    uaguauaugugc        uauacg accgagg guaugcgguaagu guu cgggu gc   a
guug            uauagccu      a       a             u   c     a  uau 


Annotation confidence Not enough data
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Genome context
chr5: 65436314-65436442 [-]

Database links

Mature sly-miR160a

Accession MIMAT0007914
Description Solanum lycopersicum sly-miR160a mature miRNA
Sequence 20 - UGCCUGGCUCCCUGUAUGCCA - 40
Evidence experimental
454 [1]

References

  1. PubMed ID: 18653800
    Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening
    "Moxon S, Jing R, Szittya G, Schwach F, Rusholme Pilcher RL, Moulton V, Dalmay T"
    "Genome Res (2008) 18:1602-1609