miRBase entry: ptr-mir-1236

Stem-loop ptr-mir-1236


Accession
MI0008438
Description
Pan troglodytes ptr-mir-1236 precursor miRNA
Gene family
MIPF0000689; mir-1236


Sequence

gugagugacaggggaaauggggauggacuggaagugggcagcauggagcugaccuucaucauggcuuggccaacauaaugCCUCUUCCCCUUGUCUCUCCA
(.(((.((((((((((..((..(((.....((.(.(((((((.....)))).))).).)).((((...)))).)))....))..)))))).)))).)))).

Structure
- u   u    -      au  --gg   --------gacug  a u   -    a 
 g gag gaca ggggaa  gg    aug             ga g ggg cagc u
 | ||| |||| ||||||  ||    |||             || | ||| |||| g
 C CUC CUGU CCCCUU  CC    uac             cu c ucc gucg g
A -   U    U      CU  guaa   aaccgguucggua  a u   a    a 


Annotation confidence Not enough data
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Genome context
chr6: 32139422-32139522 [-]

Database links

Mature ptr-miR-1236

Accession MIMAT0007968
Description Pan troglodytes ptr-miR-1236 mature miRNA
Sequence 81 - CCUCUUCCCCUUGUCUCUCCA - 101
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70