miRBase entry: ptr-mir-141

Stem-loop ptr-mir-141


Accession
MI0008541
Description
Pan troglodytes ptr-mir-141 precursor miRNA
Gene family
MIPF0000019; mir-8


Sequence

ggccggcccuggguccaucuuccaguacaguguuggauggucuaauugugaagcuccUAACACUGUCUGGUAAAGAUGGcccccggguggguuc
.(((.((((.(((.(((((((((((.(((((((((((...((.......))...))).))))))))))))..))))))).))).)))).)))..

Structure
-g   g    u   u       --    u        -   ugg  ua 
  gcc gccc ggg ccaucuu  ccag acaguguu gga   uc  a
  ||| |||| ||| |||||||  |||| |||||||| |||   ||  u
  ugg uggg ccc GGUAGAA  GGUC UGUCACAA ccu   ag  u
cu   g    c   c       AU    -        U   cga  ug 


Annotation confidence Not enough data
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Genome context
chr12: 7286482-7286575 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ptr-mir-141
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-141

Accession MIMAT0008036
Description Pan troglodytes ptr-miR-141 mature miRNA
Sequence 58 - UAACACUGUCUGGUAAAGAUGG - 79
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70