miRBase entry: ptr-mir-193b

Stem-loop ptr-mir-193b


Accession
MI0008567
Description
Pan troglodytes ptr-mir-193b precursor miRNA
Gene family
MIPF0000082; mir-193


Sequence

uggucucagaaucgggguuuugagggcgagaugaguuuauguuuuauccAACUGGCCCUCAAAGUCCCGCUuuuggggucau
(((((((((((.(((((((((((((((.((.((.((.........)).)).)).))))))))))))))).))))))))))).

Structure
-           u               g  a  a  uua 
 uggucucagaa cgggguuuugagggc ag ug gu   u
 ||||||||||| ||||||||||||||| || || ||   g
 acugggguuuU GCCCUGAAACUCCCG UC Ac ua   u
u           C               G  A  c  uuu 


Annotation confidence Not enough data
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Genome context
chr16: 14751623-14751704 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ptr-mir-193b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-193b

Accession MIMAT0008059
Description Pan troglodytes ptr-miR-193b mature miRNA
Sequence 50 - AACUGGCCCUCAAAGUCCCGCU - 71
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70