Stem-loop ptr-mir-199b

Accession

MI0008572

Description

Pan troglodytes ptr-mir-199b precursor miRNA

Gene family

MIPF0000040; mir-199

Literature search

1 open access papers mention ptr-mir-199b
(1 sentences)

Sequence

ccagaggacaccuccacuccgucuacccaguguuuagacuaucuguucaggacucccaaauuguACAGUAGUCUGCACAUUGGUUAggcugggcuggguuagacccucg
...((((.....(((((((.(((((.(((((((.(((((((.((((.(((..........))).))))))))))).))))))).))))).))).))))......)))).

Structure

cca    -acacc    -   c     c       u       u    u   gacu 
   gagg      ucca cuc gucua ccagugu uagacua cugu cag    c
   ||||      |||| ||| ||||| ||||||| ||||||| |||| |||     
   cucc      gggu ggg cggAU GGUUACA GUCUGAU GACA guu    c
--g    cagauu    c   u     U       C       -    u   aaac 

Annotation confidence Not enough data

Genome context

chr9: 106385739-106385847 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ptr-mir-199b

Mature ptr-miR-199b

• Accession: MIMAT0008062
• Description: Pan troglodytes ptr-miR-199b mature miRNA
• Sequence: 65 - ACAGUAGUCUGCACAUUGGUUA - 86
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70