miRBase entry: ptr-mir-302d

Stem-loop ptr-mir-302d


Accession
MI0008602
Description
Pan troglodytes ptr-mir-302d precursor miRNA
Gene family
MIPF0000071; mir-302


Sequence

ccucuacuuuaacauggaggcacuugcugugacaugacaaaaaUAAGUGCUUCCAUGUUUGAGUGUg
....(((((.((((((((((((((((.(((......)))....)))))))))))))))).)))))..

Structure
ccuc     u                ---c   ga 
    uacuu aacauggaggcacuug    ugu  c
    ||||| ||||||||||||||||    |||   
    GUGAG UUGUACCUUCGUGAAU    aca  a
--gU     U                aaaa   gu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr4: 115711299-115711365 [-]
Clustered miRNAs
4 other miRNAs are < 10 kb from ptr-mir-302d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-302d

Accession MIMAT0008089
Description Pan troglodytes ptr-miR-302d mature miRNA
Sequence 44 - UAAGUGCUUCCAUGUUUGAGUGU - 66
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70