miRBase entry: ptr-mir-339

Stem-loop ptr-mir-339


Accession
MI0008626
Description
Pan troglodytes ptr-mir-339 precursor miRNA
Gene family
MIPF0000193; mir-339


Sequence

cggggcggccgcucucccuguccuccaggagcucacgugugccugccugUGAGCGCCUCGACGACAGAGCCagcgccugccccagugucugcg
.(((((((.((((..(.(((((.((.(((.(((((((.((....)).))))))).))).)).))))).)..)))).)))))))..........

Structure
---------c       c    cu c     c  c   a       u  g 
          ggggcgg cgcu  c cuguc uc agg gcucacg gu c
          ||||||| ||||  | ||||| || ||| ||||||| ||  
          ccccguc gcga  G GACAG AG UCC CGAGUgu cg c
gcgucuguga       c    CC A     C  C   G       c  u 


Annotation confidence Not enough data
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Genome context
chr7: 42576-42668 [+]

Database links

Mature ptr-miR-339

Accession MIMAT0008107
Description Pan troglodytes ptr-miR-339 mature miRNA
Sequence 50 - UGAGCGCCUCGACGACAGAGCC - 71
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70