miRBase entry: ptr-mir-431

Stem-loop ptr-mir-431


Accession
MI0008666
Description
Pan troglodytes ptr-mir-431 precursor miRNA
Gene family
MIPF0000142; mir-431


Sequence

ccugcuuguccugcgaggUGUCUUGCAGGCCGUCAUGCAggccacacugacgguaacguugcaggucgucuugcagggcuucucgcaagacgacauccucaucaccaacgacg
..((.(((((.(((((((.((((((((((.((.(.((((((((........)))....))))).).)).)))))))))).))))))).)))))))..................

Structure
----------------cc  c     c       U          C  U A     ----   aca 
                  ug uuguc ugcgagg GUCUUGCAGG CG C UGCAg    gcc   c
                  || ||||| ||||||| |||||||||| || | |||||    |||    
                  ac agcag acgcucu cgggacguuc gc g acguu    ugg   u
gcagcaaccacuacuccu  -     a       u          u  u g     gcaa   cag 


Annotation confidence Not enough data
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Genome context
chr14: 86125968-86126080 [+]
Clustered miRNAs
6 other miRNAs are < 10 kb from ptr-mir-431
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-431

Accession MIMAT0008145
Description Pan troglodytes ptr-miR-431 mature miRNA
Sequence 19 - UGUCUUGCAGGCCGUCAUGCA - 39
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70