Stem-loop sequence ptr-mir-433

Accession

MI0008668 (change log)

Description

Pan troglodytes miR-433 stem-loop

Gene family

MIPF0000177; mir-433

Literature search

1 open access papers mention ptr-mir-433
(89 sentences)

Stem-loop

   cgg      gua   u           u   --------  g     cu 
5'    ggagaa   cgg gagccugucau auu        ca agagg  a
      ||||||   ||| ||||||||||| |||        || |||||   
3'    ccucuu   gcu cucggguagua uag        gu ucucc  g
   gga      gug   c           c   gaagaguu  g     ua 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Pan_tro3.0; GCA_000001515.5): chr14: 86126847-86126938 [+]
• Overlapping transcripts:

  sense

  ENSPTRT00000054782 ; ptr-mir-433-201; exon 1

  antisense

  ENSPTRT00000012391 ; ptr-mir-136-201; exon 2

Clustered miRNAs

< 10kb from ptr-mir-433

• ptr-mir-337: chr14: 86119486-86119577 [+]
• ptr-mir-665: chr14: 86120026-86120096 [+]
• ptr-mir-431: chr14: 86125968-86126080 [+]
• ptr-mir-433: chr14: 86126847-86126938 [+]
• ptr-mir-127: chr14: 86127939-86128035 [+]
• ptr-mir-432: chr14: 86129447-86129539 [+]
• ptr-mir-136: chr14: 86129665-86129746 [+]

Database links

• EntrezGene:MIR433
• miRBase Tracker:MI0008668

Mature sequence ptr-miR-433

• Accession: MIMAT0008147
• Sequence: 63 - aucaugaugggcuccucggugu - 84
• Evidence: by similarity; MI0001723
• Predicted targets:
  • TargetScanVert:ptr-miR-433

References

1. PMID:18760970 "Computational identification of novel microRNA homologs in the chimpanzee genome" Baev V, Daskalova E, Minkov I Comput Biol Chem. 33:62-70(2009).