miRBase entry: ptr-mir-494

Stem-loop ptr-mir-494


Accession
MI0008690
Description
Pan troglodytes ptr-mir-494 precursor miRNA
Gene family
MIPF0000018; mir-154


Sequence

auacucgaaggagagguuguccguguugucuucucuuuauuuaugaUGAAACAUACACGGGAAACCUCuuuuuuaguauc
(((((.((((((((((((.((((((((((.(((((.........)).)))))).))))))).))))))))))))))))).

Structure
-     c            g       -   c   -  uuu 
 auacu gaaggagagguu uccgugu ugu uuc uc   a
 ||||| |||||||||||| ||||||| ||| ||| ||   u
 uauga uuuuuuCUCCAA GGGCACA ACA AAG ag   u
c     -            A       U   -   U  uau 


Annotation confidence Not enough data
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Genome context
chr14: 86278152-86278231 [+]
Clustered miRNAs
12 other miRNAs are < 10 kb from ptr-mir-494
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-494

Accession MIMAT0008168
Description Pan troglodytes ptr-miR-494 mature miRNA
Sequence 47 - UGAAACAUACACGGGAAACCUC - 68
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70