miRBase entry: ptr-mir-503

Stem-loop ptr-mir-503


Accession
MI0008698
Description
Pan troglodytes ptr-mir-503 precursor miRNA
Gene family
MIPF0000183; mir-503

Literature search
1 open access papers mention ptr-mir-503
(23 sentences)

Sequence

ugcccUAGCAGCGGGAACAGUUCUGCAGugagcgaucggugcucuggaguauuguuuccgcugccagggu
.(((((.((((((((((((((.((.((..(((((.....))))))).)).)))))))))))))).)))))

Structure
u     A              U  G  Gu     a 
 gcccU GCAGCGGGAACAGU CU CA  gagcg u
 ||||| |||||||||||||| || ||  ||||| c
 uggga cgucgccuuuguua ga gu  cucgu g
-     c              u  g  --     g 


Annotation confidence Not enough data
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Genome context
chrX: 134416955-134417024 [-]
Clustered miRNAs
4 other miRNAs are < 10 kb from ptr-mir-503
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-503

Accession MIMAT0008176
Description Pan troglodytes ptr-miR-503 mature miRNA
Sequence 6 - UAGCAGCGGGAACAGUUCUGCAG - 28
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70