miRBase entry: ptr-mir-520e

Stem-loop ptr-mir-520e


Accession
MI0008727
Description
Pan troglodytes ptr-mir-520e precursor miRNA
Gene family
MIPF0000020; mir-515


Sequence

cuccugcugugacccucaagauggaagcaguuucuguugucugaaaggaaagAAAGUGCUUCCUUUUUGAGGGuuacuguuugaga
(((..((.(((((((((((((.(((((((.(((((....(((...)))..))))).))))))).))))))))))))).))..))).

Structure
-   cu  u             u       g     guug   g 
 cuc  gc gugacccucaaga ggaagca uuucu    ucu  
 |||  || ||||||||||||| ||||||| |||||    ||| a
 gag  ug cauuGGGAGUUUU CCUUCGU AAAga    gga  
a   uu  u             U       G     --aa   a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr19: 56023852-56023937 [+]
Clustered miRNAs
6 other miRNAs are < 10 kb from ptr-mir-520e
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-520e

Accession MIMAT0008201
Description Pan troglodytes ptr-miR-520e mature miRNA
Sequence 53 - AAAGUGCUUCCUUUUUGAGGG - 73
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70