miRBase entry: ptr-mir-521-2

Stem-loop ptr-mir-521-2


Accession
MI0008732
Description
Pan troglodytes ptr-mir-521-2 precursor miRNA
Gene family
MIPF0000020; mir-515


Sequence

cucaggcugugacucuccaaagggaagaauuuucucuugucuaaaagaaaagAACGCACUUCCCUUUAGAGUGUuaccgugugaga
((((.((.(((((.(((.(((((((((....(((((((......))))...)))....))))))))).))).))))).)).)))).

Structure
-    g  u     u   c         aauu   ---    gu 
 cuca gc gugac cuc aaagggaag    uuc   ucuu  c
 |||| || ||||| ||| |||||||||    |||   ||||   
 gagu ug cauUG GAG UUUCCCUUC    AAg   agaa  u
a    g  c     U   A         ACGC   aaa    aa 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr19: 56063505-56063590 [+]
Clustered miRNAs
10 other miRNAs are < 10 kb from ptr-mir-521-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-521

Accession MIMAT0008205
Description Pan troglodytes ptr-miR-521 mature miRNA
Sequence 53 - AACGCACUUCCCUUUAGAGUGU - 74
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70