miRBase entry: ptr-mir-524

Stem-loop ptr-mir-524


Accession
MI0008735
Description
Pan troglodytes ptr-mir-524 precursor miRNA
Gene family
MIPF0000020; mir-515


Sequence

cucaugcugugacccuacaaagggaagcacuuucucuuguccaaaggaaaaGAAGGCGCUUCCCUUUGGAGUguuacgguuugaga
((((.((((((((.((.(((((((((((.((((((....(((...)))..)))))).))))))))))).)).)))))))).)))).

Structure
-    u        c  a           a      cuug   a 
 cuca gcugugac cu caaagggaagc cuuucu    ucc  
 |||| |||||||| || ||||||||||| ||||||    ||| a
 gagu uggcauug GA GUUUCCCUUCG GGAAGa    agg  
a    u        U  G           C      --aa   a 


Annotation confidence Not enough data
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Genome context
chr19: 56057933-56058018 [+]
Clustered miRNAs
10 other miRNAs are < 10 kb from ptr-mir-524
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-524

Accession MIMAT0008208
Description Pan troglodytes ptr-miR-524 mature miRNA
Sequence 52 - GAAGGCGCUUCCCUUUGGAGU - 72
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70