miRBase entry: ptr-mir-526b

Stem-loop ptr-mir-526b


Accession
MI0008739
Description
Pan troglodytes ptr-mir-526b precursor miRNA
Gene family
MIPF0000020; mir-515


Sequence

caggcugugaccCUCUUGAGGGAAGCACUUUCUGUugucugaaagaaaagaaagugcuuccuuuuagaggcuuacugucuga
(((((.((((.(((((.((((((((((((((((....(((...)))..)))))))))))))))).))))).)))).))))).

Structure
-     u    c     U                GUug   g 
 caggc guga cCUCU GAGGGAAGCACUUUCU    ucu  
 ||||| |||| ||||| ||||||||||||||||    ||| a
 gucug cauu ggaga uuuccuucgugaaaga    aga  
a     u    c     u                --aa   a 


Annotation confidence Not enough data
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Genome context
chr19: 56042520-56042601 [+]
Clustered miRNAs
10 other miRNAs are < 10 kb from ptr-mir-526b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-526b

Accession MIMAT0008211
Description Pan troglodytes ptr-miR-526b mature miRNA
Sequence 13 - CUCUUGAGGGAAGCACUUUCUGU - 35
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70