miRBase entry: ptr-mir-544

Stem-loop ptr-mir-544


Accession
MI0008744
Description
Pan troglodytes ptr-mir-544 precursor miRNA
Gene family
MIPF0000436; mir-544


Sequence

uuuucaucaccuagggaucuuguuaaaaagcagauucugauucagggaccaagAUUCUGCAUUUUUAGCAAGUUCucaagugaugcuaau
....((((((...((((.((((((((((((((((.(((.............))).))))).))))))))))).))))..)))))).....

Structure
-uuuu      cua    u           -     u   gauuc 
     caucac   ggga cuuguuaaaaa gcaga ucu     a
     ||||||   |||| ||||||||||| ||||| |||     g
     guagug   cuCU GAACGAUUUUU CGUCU Aga     g
uaauc      -aa    U           A     U   accag 


Annotation confidence Not enough data
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Genome context
chr14: 86296887-86296976 [+]
Clustered miRNAs
19 other miRNAs are < 10 kb from ptr-mir-544
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-544

Accession MIMAT0008216
Description Pan troglodytes ptr-miR-544 mature miRNA
Sequence 54 - AUUCUGCAUUUUUAGCAAGUUC - 75
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70