Stem-loop ptr-mir-548c

Accession

MI0008749

Description

Pan troglodytes ptr-mir-548c precursor miRNA

Gene family

MIPF0000317; mir-548

Literature search

1 open access papers mention ptr-mir-548c
(2 sentences)

Sequence

cauuggcaucuauuagguuggugcaaaaguaauugcgguuuuugccauuacuuucaguagCAAAAAUCUCAAUUACUUUUGCaccaacuuaauacu
..........(((((((((((((((((((((((((.(((((((((...((((...))))))))))))).)))))))))))))))))))))))))..

Structure

cauuggcauc                         c         cau    u 
          uauuagguuggugcaaaaguaauug gguuuuugc   uacu  
          ||||||||||||||||||||||||| |||||||||   |||| u
          auaauucaaccaCGUUUUCAUUAAC CUAAAAACg   auga  
--------uc                         U         ---    c 

Annotation confidence Not enough data

Genome context

chr12: 25054828-25054923 [-]

Mature ptr-miR-548c

• Accession: MIMAT0008220
• Description: Pan troglodytes ptr-miR-548c mature miRNA
• Sequence: 61 - CAAAAAUCUCAAUUACUUUUGC - 82
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70