Stem-loop ptr-mir-548i-5

Accession

MI0008757

Description

Pan troglodytes ptr-mir-548i-5 precursor miRNA

Gene family

MIPF0000317; mir-548

Literature search

1 open access papers mention ptr-mir-548i-5
(2 sentences)

Sequence

agauggcuccgaaguuugcauccuauuagguuggugcAAAAGUAAUUGCGGAUUUUGCCauuaaaaguaauggcaaaaacagcaauucuuuuuguagcagccuaguaucuuuucuccuucuaccaaacuuugucccugagacaucuca
(((((.((((((((((((.....((((((((((.((((((((.((((((.(.(((((((((((....))))))))))).).)))))).)))))))).))))))))))................))))))))).....))).)))))..

Structure

--     g   -----         -----------caucc          g        U      G A           a 
  agaug cuc     cgaaguuug                uauuagguug ugcAAAAG AAUUGC G UUUUGCCauua a
  ||||| |||     |||||||||                |||||||||| |||||||| |||||| | |||||||||||  
  ucuac gag     guuucaaac                augauccgac auguuuuu uuaacg c aaaacgguaau a
ac     a   ucccu         caucuuccucuuuucu          g        c      a a           g 

Annotation confidence Not enough data

Genome context

chr8: 11615810-11615957 [+]

Mature ptr-miR-548i

• Accession: MIMAT0008223
• Description: Pan troglodytes ptr-miR-548i mature miRNA
• Sequence: 38 - AAAAGUAAUUGCGGAUUUUGCC - 59
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70