Stem-loop ptr-mir-554

Accession

MI0008772

Description

Pan troglodytes ptr-mir-554 precursor miRNA

Gene family

MIPF0000551; mir-554

Sequence

ccugaguaaccuuuGCUAGUCCUGACUCAGCCAGUacuggucuuagacuggugaugggucaggguucauauuuuggcaucucucucugggcaucu
((.(((.......((((((((((((((((((((((.(((....)))))))))..))))))))))........)))))).....))).))......

Structure

------  u   uaaccuu      --------          --      a   g 
      cc gag       uGCUAG        UCCUGACUCA  GCCAGU cug u
      || |||       ||||||        ||||||||||  |||||| |||  
      gg cuc       acgguu        gggacugggu  ugguca gau c
ucuacg  u   --ucucu      uuauacuu          ag      -   u 

Annotation confidence Not enough data

Genome context

chr1: 129525018-129525112 [+]

Mature ptr-miR-554

• Accession: MIMAT0008235
• Description: Pan troglodytes ptr-miR-554 mature miRNA
• Sequence: 15 - GCUAGUCCUGACUCAGCCAGU - 35
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70