miRBase entry: ptr-mir-564

Stem-loop ptr-mir-564


Accession
MI0008780
Description
Pan troglodytes ptr-mir-564 precursor miRNA
Gene family
MIPF0000612; mir-564


Sequence

gggcggcgggugccAGGCACGGUGUCAGCAGGCaacauggcugagaggccggggccuccgggcggcgccguguccgcgaccgcguacccugac
(((..((((..((..(((((((((((.((((((....(((((....)))))..))))....))))))))))))).))..))))...)))....

Structure
----   -cg    gu  cA           A  ----    aaca     g 
    ggg   gcgg  gc  GGCACGGUGUC GC    AGGC    uggcu a
    |||   ||||  ||  ||||||||||| ||    ||||    |||||  
    ccc   cgcc  cg  cugugccgcgg cg    uccg    gccgg g
cagu   aug    ag  -c           -  ggcc    --gg     a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr3: 45832270-45832362 [+]

Database links

Mature ptr-miR-564

Accession MIMAT0008243
Description Pan troglodytes ptr-miR-564 mature miRNA
Sequence 15 - AGGCACGGUGUCAGCAGGC - 33
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70