miRBase entry: ptr-mir-572

Stem-loop ptr-mir-572


Accession
MI0008785
Description
Pan troglodytes ptr-mir-572 precursor miRNA
Gene family
MIPF0000537; mir-572


Sequence

gucgaggccguggcccggaaguggucggggccgcugcggacggaagggcgccugugcuucGUCCGCUCGGCGGUGGCCCAgccaggcccgcggg
.......((((((.((.....((((..((((((((((.((((((.((((......))))..)))).)).)))))))))).)))))).)))))).

Structure
gucgagg      c  ggaag    cg          g  -    -a    gc 
       ccgugg cc     uggu  gggccgcugc ga cgga  gggc  c
       |||||| ||     ||||  |||||||||| || ||||  ||||   
       ggcgcc gg     accg  CCCGGUGGCG CU GCCU  uucg  u
------g      c  -----    -A          G  C    Gc    ug 


Annotation confidence Not enough data
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Genome context
chr16: 2464814-2464907 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ptr-mir-572
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-572

Accession MIMAT0008248
Description Pan troglodytes ptr-miR-572 mature miRNA
Sequence 61 - GUCCGCUCGGCGGUGGCCCA - 80
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70