miRBase entry: ptr-mir-575

Stem-loop ptr-mir-575


Accession
MI0008786
Description
Pan troglodytes ptr-mir-575 precursor miRNA
Gene family
MIPF0000586; mir-575


Sequence

auucagcccugccacuggcuuaugucaugaccuugggcuacucaggcugucugcacaauGAGCCAGCUGGACAGGAGCagugccacucaacuc
.....((((((((((((((((((((((.(((((((((...))))))..))))).)).))))))))).))).)))).))(((........))).

Structure
----------auuca  -    -   -         -  -  u   --      c 
               gc ccug cca cuggcuuau gu ca gac  cuuggg  
               || |||| ||| ||||||||| || || |||  |||||| u
               CG GGAC GGU GACCGAGua ca gu cug  ggacuc  
cucaacucaccguga  A    A   C         a  c  -   uc      a 


Annotation confidence Not enough data
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Genome context
chr4: 47687045-47687137 [+]

Database links

Mature ptr-miR-575

Accession MIMAT0008249
Description Pan troglodytes ptr-miR-575 mature miRNA
Sequence 60 - GAGCCAGCUGGACAGGAGC - 78
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70