Stem-loop ptr-mir-643

Accession

MI0008834

Description

Pan troglodytes ptr-mir-643 precursor miRNA

Gene family

MIPF0000488; mir-643

Sequence

ccaagugauauucauuguguaccugagcuagaauacaagugguuggcgucuucagagacACUUGUAUGCUAGCUCAGGUAGauauugaaugaaaaa
........((((((.(((.((((((((((((.(((((((((.((((.....))))...))))))))).)))))))))))).))).)))))).....

Structure

ccaaguga      u   g            a         --g    c 
        uauuca ugu uaccugagcuag auacaagug   uugg g
        |||||| ||| |||||||||||| |||||||||   |||| u
        guaagu aua AUGGACUCGAUC UAUGUUCAc   gacu c
---aaaaa      u   G            G         aga    u 

Annotation confidence Not enough data

Genome context

chr19: 54549139-54549234 [+]

Mature ptr-miR-643

• Accession: MIMAT0008297
• Description: Pan troglodytes ptr-miR-643 mature miRNA
• Sequence: 60 - ACUUGUAUGCUAGCUCAGGUAG - 81
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70