miRBase entry: ptr-mir-665

Stem-loop ptr-mir-665


Accession
MI0008849
Description
Pan troglodytes ptr-mir-665 precursor miRNA
Gene family
MIPF0000404; mir-665


Sequence

cuccuggaggggucuccgccucuacccaggacucuuucaugACCAGGAGGCUGAGGCCCCUcacaggcggc
(.((((((((((((((.((((((...(((((....))).))....)))))).)))))))))).)))).)..

Structure
-- u    -          c      -acc  -   c 
  c ccug gaggggucuc gccucu    ca gga u
  | |||| |||||||||| ||||||    || |||  
  g ggac cUCCCCGGAG CGGAGG    gu cuu c
cg c    a          U      ACCA  a   u 


Annotation confidence Not enough data
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Genome context
chr14: 86120026-86120096 [+]
Clustered miRNAs
6 other miRNAs are < 10 kb from ptr-mir-665
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-665

Accession MIMAT0008312
Description Pan troglodytes ptr-miR-665 mature miRNA
Sequence 42 - ACCAGGAGGCUGAGGCCCCU - 61
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70