miRBase entry: tca-mir-317

Stem-loop tca-mir-317


Accession
MI0008930
Description
Tribolium castaneum tca-mir-317 precursor miRNA
Gene family
MIPF0000144; mir-317

Literature search
1 open access papers mention tca-mir-317
(2 sentences)

Sequence

ggcggugcUGGGGACCACCCUGUGUUuacucuguauuucgaccagUGAACACAGCUGGUGGUAUCUCAGUuucuucc
((.((.((((((((((((((((((((((((..((......)).)))))))))))..)))))).)))))))..)).))

Structure
  c  -u       -      --           cu  au 
gg gg  gcUGGGG ACCACC  CUGUGUUuacu  gu  u
|| ||  ||||||| ||||||  |||||||||||  ||   
cc uc  UGACUCU UGGUGG  GACACAAGUga  ca  u
  u  uu       A      UC           -c  gc 


Annotation confidence Not enough data
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Genome context
ChLG7: 13750590-13750666 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from tca-mir-317
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tca-miR-317-3p

Accession MIMAT0008390
Description Tribolium castaneum tca-miR-317-3p mature miRNA
Sequence 46 - UGAACACAGCUGGUGGUAUCUCAGU - 70
Evidence experimental
SOLID [2]
Database links

Mature tca-miR-317-5p

Accession MIMAT0019130
Description Tribolium castaneum tca-miR-317-5p mature miRNA
Sequence 9 - UGGGGACCACCCUGUGUU - 26
Evidence experimental
SOLID [2]
Database links

References

  1. PubMed ID: 18651924
    In silico prediction and characterization of microRNAs from red flour beetle (Tribolium castaneum)
    "Singh J, Nagaraju J"
    "Insect Mol Biol (2008) 17:427-436

  2. PubMed ID: 20817720
    Functional shifts in insect microRNA evolution
    "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
    "Genome Biol Evol (2010) 2:686-696