miRBase entry: tca-mir-iab-4

Stem-loop tca-mir-iab-4


Accession
MI0008933
Description
Tribolium castaneum tca-mir-iab-4 precursor miRNA
Gene family
MIPF0000151; mir-iab-4


Sequence

uuaaacccccuguACGUAUACUGAAUGUAUCCUGAguguuuucugucCGGUAUACCUUCAGUAUACGUAACaggaggccac
.....((.(((((((((((((((((.((((((.((..(....)..)).)).)))).)))))))))))).))))).))....

Structure
uuaaa  c     -            U    -  U  gu u 
     cc ccugu ACGUAUACUGAA GUAU CC GA  g u
     || ||||| |||||||||||| |||| || ||  |  
     gg ggaCA UGCAUAUGACUU CAUA GG cu  c u
-cacc  a     A            C    U  C  gu u 


Annotation confidence Not enough data
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Genome context
ChLG2: 7614308-7614388 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from tca-mir-iab-4
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tca-miR-iab-4-5p

Accession MIMAT0008393
Description Tribolium castaneum tca-miR-iab-4-5p mature miRNA
Sequence 14 - ACGUAUACUGAAUGUAUCCUGA - 35
Evidence experimental
SOLID [3]
Database links

Mature tca-miR-iab-4-3p

Accession MIMAT0008394
Description Tribolium castaneum tca-miR-iab-4-3p mature miRNA
Sequence 48 - CGGUAUACCUUCAGUAUACGUAAC - 71
Evidence experimental
SOLID [3]
Database links

References

  1. PubMed ID: 18651924
    In silico prediction and characterization of microRNAs from red flour beetle (Tribolium castaneum)
    "Singh J, Nagaraju J"
    "Insect Mol Biol (2008) 17:427-436

  2. PubMed ID: 18392875
    Analysis of the Tribolium homeotic complex: insights into mechanisms constraining insect Hox clusters
    "Shippy TD, Ronshaugen M, Cande J, He J, Beeman RW, Levine M, Brown SJ, Denell RE"
    "Dev Genes Evol (2008) 218:127-139

  3. PubMed ID: 20817720
    Functional shifts in insect microRNA evolution
    "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
    "Genome Biol Evol (2010) 2:686-696