miRBase entry: dan-mir-13a

Stem-loop dan-mir-13a


Accession
MI0008957
Description
Drosophila ananassae dan-mir-13a precursor miRNA
Gene family
MIPF0000049; mir-2


Sequence

uacguaacuccucaaagggcugugaaauguugccauuaucuacucaUAUCACAGCCAUUUUGAUGAGUuucgug
((((.(((((.((((((((((((((.(((...............))).)))))))).)))))).))))).))))

Structure
    u     c      -        a   uugcca 
uacg aacuc ucaaag ggcuguga aug      u
|||| ||||| |||||| |||||||| |||      u
gugc uUGAG AGUUUU CCGACACU Uac      a
    u     U      A        A   ucaucu 


Annotation confidence Not enough data
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Genome context
scaffold_13340: 12827627-12827700 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from dan-mir-13a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dan-miR-13a

Accession MIMAT0008420
Description Drosophila ananassae dan-miR-13a mature miRNA
Sequence 47 - UAUCACAGCCAUUUUGAUGAGU - 68
Evidence not_experimental

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218