miRBase entry: dan-mir-3

Stem-loop dan-mir-3


Accession
MI0008960
Description
Drosophila ananassae dan-mir-3 precursor miRNA
Gene family
MIPF0000140; mir-3


Sequence

gaucuugggacgcauuuugugcaguuaugcaccaaaaauauauccaUCACUGGGCAAAGUGUGUCUCAggauc
((((((((((((((((((((.((((.(((...............))).)))).))))))))))))))))))))

Structure
                    g    u   caccaa 
gaucuugggacgcauuuugu cagu aug      a
|||||||||||||||||||| |||| |||      a
cuaggACUCUGUGUGAAACG GUCA Uac      a
                    G    C   cuauau 


Annotation confidence Not enough data
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Genome context
scaffold_13266: 9731226-9731298 [+]
Clustered miRNAs
7 other miRNAs are < 10 kb from dan-mir-3
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dan-miR-3

Accession MIMAT0008423
Description Drosophila ananassae dan-miR-3 mature miRNA
Sequence 47 - UCACUGGGCAAAGUGUGUCUCA - 68
Evidence not_experimental

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218