miRBase entry: dan-mir-281-2

Stem-loop dan-mir-281-2


Accession
MI0008965
Description
Drosophila ananassae dan-mir-281-2 precursor miRNA
Gene family
MIPF0000087; mir-46


Sequence

cgaauagugaaaugAAGAGAGCUAUCCGUCGACAGUcaaguuaaaacacggauuguaauacUGUCAUGGAAUUGCUCUCUUUGUauaacauucg
(((((.((...(((((((((((..(((((.((((((..((((........)))).....)))))))))))...)))))))))))...)))))))

Structure
     a  gaa           -UA     C      ---ca    aaa 
cgaau gu   augAAGAGAGC   UCCGU GACAGU     aguu   a
||||| ||   |||||||||||   ||||| ||||||     ||||    
gcuua ca   UGUUUCUCUCG   AGGUA CUGUca     uuag   c
     -  aua           UUA     -      uaaug    gca 


Annotation confidence Not enough data
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Genome context
scaffold_13266: 2568938-2569031 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from dan-mir-281-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dan-miR-281-2-5p

Accession MIMAT0009182
Description Drosophila ananassae dan-miR-281-2-5p mature miRNA
Sequence 15 - AAGAGAGCUAUCCGUCGACAGU - 36
Evidence not_experimental

Mature dan-miR-281-3p

Accession MIMAT0008429
Description Drosophila ananassae dan-miR-281-3p mature miRNA
Sequence 62 - UGUCAUGGAAUUGCUCUCUUUGU - 84
Evidence not_experimental

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218