miRBase entry: dan-mir-34

Stem-loop dan-mir-34

Accession

MI0008974

Description

Drosophila ananassae dan-mir-34 precursor miRNA

Gene family

MIPF0000039; mir-34

Sequence

uggcuaugcgcuuUGGCAGUGUGGUUAGCUGGUUGuguagcuggugcucguuggcaauuaauucacagccacuaucuucacugccgccgcgacaagc
..(((.(((((..((((((((.((.(((.((((((((.......((((....)))).......))))))))))).)).))))))))..))).)))))

Structure

ug   a  -   uu        U  U   C        uagcugg    c 
  gcu ug cgc  UGGCAGUG GG UAG UGGUUGug       ugcu g
  ||| || |||  |||||||| || ||| ||||||||       ||||  
  cga ac gcg  gccgucac uc auc accgacac       acgg u
--   -  a   cc        u  u   -        uuaauua    u

Annotation confidence Not enough data

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Genome context

scaffold_13340: 6489985-6490081 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from dan-mir-34

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dan-miR-34

Accession	MIMAT0008439
Description	Drosophila ananassae dan-miR-34 mature miRNA
Sequence	14 - UGGCAGUGUGGUUAGCUGGUUG - 35
Evidence	not_experimental

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218