miRBase entry: dan-mir-9c

Stem-loop dan-mir-9c


Accession
MI0008993
Description
Drosophila ananassae dan-mir-9c precursor miRNA
Gene family
MIPF0000014; mir-9


Sequence

auuuuugcuguuUCUUUGGUAUUCUAGCUGUAGAuuguuucacgcacauuguauaucaucuaaagcuuuuauaccaaagcuccagcuuaaau
((((..((((...(((((((((...((((.(((((.(....(((.....)))....)))))).))))...)))))))))...))))..))))

Structure
    uu    uuU         UCU    G     u uuuc   c 
auuu  gcug   CUUUGGUAU   AGCU UAGAu g    acg a
||||  ||||   |||||||||   |||| ||||| |    ||| c
uaaa  cgac   gaaaccaua   ucga aucua c    ugu a
    uu    cuc         uuu    a     - uaua   u 


Annotation confidence Not enough data
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Genome context
scaffold_12916: 15865474-15865565 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from dan-mir-9c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dan-miR-9c

Accession MIMAT0008456
Description Drosophila ananassae dan-miR-9c mature miRNA
Sequence 13 - UCUUUGGUAUUCUAGCUGUAGA - 34
Evidence not_experimental

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218