miRBase entry: dan-mir-133

Stem-loop dan-mir-133


Accession
MI0009005
Description
Drosophila ananassae dan-mir-133 precursor miRNA
Gene family
MIPF0000029; mir-133


Sequence

ugcaacgcuguauguagcugguugacaucgggucagaucuaucuuuucaagcauUUGGUCCCCUUCAACCAGCUGUagcagugguugau
..(((((((((.(((((((((((((....(((((((((((.........)).)))))).)))..)))))))))))))))))).))))..

Structure
ug    -     a             cauc   -      -  auc 
  caac gcugu uguagcugguuga    ggg ucagau cu   u
  |||| ||||| |||||||||||||    ||| |||||| ||   u
  guug ugacg aUGUCGACCAACU    CCC GGUUua ga   u
ua    g     -             --UC   U      c  acu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
scaffold_12916: 7117525-7117613 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from dan-mir-133
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dan-miR-133

Accession MIMAT0008468
Description Drosophila ananassae dan-miR-133 mature miRNA
Sequence 55 - UUGGUCCCCUUCAACCAGCUGU - 76
Evidence not_experimental

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218