miRBase entry: der-mir-306

Stem-loop der-mir-306

Accession

MI0009033

Description

Drosophila erecta der-mir-306 precursor miRNA

Gene family

MIPF0000313; mir-306

Sequence

guccacucgguggcUCAGGUACUUAGUGACUCUCAAugcuuuugacauuuuGGGGGUCACUCUGUGCCUGUGCugccagugggac
.((((((.((((((.(((((((..(((((((((((((((....).)))..)))))))))))..))))))).))))))))))))..

Structure

-g      c      U       UU           --   - u 
  uccacu gguggc CAGGUAC  AGUGACUCUCA  Aug c u
  |||||| |||||| |||||||  |||||||||||  ||| |  
  ggguga ccguCG GUCCGUG  UCACUGGGGGu  uac g u
ca      -      U       UC           uu   a u

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

scaffold_4845: 19768055-19768139 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from der-mir-306

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature der-miR-306-5p

Accession	MIMAT0008494
Description	Drosophila erecta der-miR-306-5p mature miRNA
Sequence	15 - UCAGGUACUUAGUGACUCUCAA - 36
Evidence	not_experimental

Mature der-miR-306-3p

Accession	MIMAT0008495
Description	Drosophila erecta der-miR-306-3p mature miRNA
Sequence	52 - GGGGGUCACUCUGUGCCUGUGC - 73
Evidence	not_experimental

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218