miRBase entry: der-mir-281-2

Stem-loop der-mir-281-2


Accession
MI0009040
Description
Drosophila erecta der-mir-281-2 precursor miRNA
Gene family
MIPF0000087; mir-46


Sequence

cgaauugugaaaugAAGAGAGCUAUCCGUCGACAGUcaaguuaauaccgauuguaauacUGUCAUGGAAUUGCUCUCUUUGUauaacauucg
(((((.((...(((((((((((..(((((.((((((.....((((....))))....)))))))))))...)))))))))))...)))))))

Structure
     u  gaa           -UA     C      caagu    a 
cgaau gu   augAAGAGAGC   UCCGU GACAGU     uaau c
||||| ||   |||||||||||   ||||| ||||||     ||||  
gcuua ca   UGUUUCUCUCG   AGGUA CUGUca     guua c
     -  aua           UUA     -      -uaau    g 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
scaffold_4845: 17736415-17736506 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from der-mir-281-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature der-miR-281-2-5p

Accession MIMAT0009183
Description Drosophila erecta der-miR-281-2-5p mature miRNA
Sequence 15 - AAGAGAGCUAUCCGUCGACAGU - 36
Evidence not_experimental

Mature der-miR-281-3p

Accession MIMAT0008502
Description Drosophila erecta der-miR-281-3p mature miRNA
Sequence 60 - UGUCAUGGAAUUGCUCUCUUUGU - 82
Evidence not_experimental

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218