miRBase entry: der-mir-311b-1

Stem-loop der-mir-311b-1


Accession
MI0009060
Description
Drosophila erecta der-mir-311b-1 precursor miRNA
Gene family
MIPF0000566; mir-310


Sequence

caauuuuCGGCUGUGGAGUGGGCUAGUacugugauuuuaacauugagUAUUGCACAUUCCCCAGCCUGAaagugu
..(((((((((((.((((((.((.(((((((((.......)))..)))))))).)))))).))))).))))))..

Structure
ca      -     U      G  U      --   au 
  auuuuC GGCUG GGAGUG GC AGUacu  gug  u
  |||||| ||||| |||||| || ||||||  |||  u
  ugaaAG CCGAC CCUUAC CG UUAUga  uac  u
ug      U     C      A  -      gu   aa 


Annotation confidence Not enough data
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Genome context
scaffold_4845: 10616837-10616911 [-]
Clustered miRNAs
14 other miRNAs are < 10 kb from der-mir-311b-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature der-miR-311b-3p

Accession MIMAT0008520
Description Drosophila erecta der-miR-311b-3p mature miRNA
Sequence 48 - UAUUGCACAUUCCCCAGCCUGA - 69
Evidence experimental
Illumina [2]

Mature der-miR-311b-5p

Accession MIMAT0037338
Description Drosophila erecta der-miR-311b-5p mature miRNA
Sequence 8 - CGGCUGUGGAGUGGGCUAGU - 27
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218

  2. PubMed ID: 24985917
    Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
    "Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
    "Genome Res (2014) 24:1236-1250