miRBase entry: der-mir-281-1

Stem-loop der-mir-281-1


Accession
MI0009068
Description
Drosophila erecta der-mir-281-1 precursor miRNA
Gene family
MIPF0000087; mir-46


Sequence

cgaauaagugaauaAAGAGAGCUGUCCGUCGACAGUccagaaaccauuuaauaucacUGUCAUGGAAUUGCUCUCUUUGUauaauauucg
((((((.....(((((((((((..(((((.((((((...................)))))))))))...)))))))))))....))))))

Structure
      aguga           -UG     C      ccagaaac 
cgaaua     auaAAGAGAGC   UCCGU GACAGU        c
||||||     |||||||||||   ||||| ||||||        a
gcuuau     UGUUUCUCUCG   AGGUA CUGUca        u
      -aaua           UUA     -      cuauaauu 


Annotation confidence Not enough data
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Genome context
scaffold_4845: 17736197-17736286 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from der-mir-281-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature der-miR-281-3p

Accession MIMAT0008502
Description Drosophila erecta der-miR-281-3p mature miRNA
Sequence 58 - UGUCAUGGAAUUGCUCUCUUUGU - 80
Evidence not_experimental

Mature der-miR-281-1-5p

Accession MIMAT0008501
Description Drosophila erecta der-miR-281-1-5p mature miRNA
Sequence 15 - AAGAGAGCUGUCCGUCGACAGU - 36
Evidence not_experimental

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218