miRBase entry: dgr-mir-9b

Stem-loop dgr-mir-9b


Accession
MI0009122
Description
Drosophila grimshawi dgr-mir-9b precursor miRNA
Gene family
MIPF0000014; mir-9


Sequence

ugcauauuauuugcUCUUUGGUGAUUUUAGCUCUAUGgugugcgcauaauccacagagcuuuauuaccaaaaaccaaaugguuuuugca
((((.((((((((...(((((((((...((((((.(((............))).))))))..)))))))))...))))))))...))))

Structure
    --u        cUC         UUU      A   ugugc 
ugca   auuauuug   UUUGGUGAU   AGCUCU UGg     g
||||   ||||||||   |||||||||   |||||| |||      
acgu   ugguaaac   aaaccauua   ucgaga acc     c
    uuu        caa         -uu      c   uaaua 


Annotation confidence Not enough data
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Genome context
scaffold_14978: 831298-831386 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from dgr-mir-9b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dgr-miR-9b

Accession MIMAT0008582
Description Drosophila grimshawi dgr-miR-9b mature miRNA
Sequence 15 - UCUUUGGUGAUUUUAGCUCUAUG - 37
Evidence not_experimental

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218