miRBase entry: dgr-mir-133

Stem-loop dgr-mir-133


Accession
MI0009171
Description
Drosophila grimshawi dgr-mir-133 precursor miRNA
Gene family
MIPF0000029; mir-133


Sequence

uacaacgcuguauguagcugguugacaucgggucagaucuauuuauucgaguauUUGGUCCCCUUCAACCAGCUGUagcagugguugau
..(((((((((.(((((((((((((....(((((((((((.........)).)))))).)))..)))))))))))))))))).))))..

Structure
ua    -     a             cauc   -      -  auu 
  caac gcugu uguagcugguuga    ggg ucagau cu   u
  |||| ||||| |||||||||||||    ||| |||||| ||   a
  guug ugacg aUGUCGACCAACU    CCC GGUUua ga   u
ua    g     -             --UC   U      u  gcu 


Annotation confidence Not enough data
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Genome context
scaffold_15126: 6389871-6389959 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from dgr-mir-133
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dgr-miR-133

Accession MIMAT0008620
Description Drosophila grimshawi dgr-miR-133 mature miRNA
Sequence 55 - UUGGUCCCCUUCAACCAGCUGU - 76
Evidence not_experimental

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218