miRBase entry: dgr-mir-92b

Stem-loop dgr-mir-92b


Accession
MI0009178
Description
Drosophila grimshawi dgr-mir-92b precursor miRNA
Gene family
MIPF0000013; mir-25


Sequence

aacgucaccugauguaggucgugccuggugcuuauuuguuguuaugugaaaauacaAAUUGCACUAGUCCCGGCCUGCagugagugucgca
..((.(((....(((((((((.(.(((((((..((((((..((......))..)))))).))))))).).)))))))))....))).))..

Structure
aa  u   cuga         u c       uu      ug  au 
  cg cac    uguaggucg g cuggugc  auuugu  uu  g
  || |||    ||||||||| | |||||||  ||||||  ||   
  gc gug    aCGUCCGGC C GAUCACG  UAAaca  aa  u
ac  u   agug         C U       -U      ua  ag 


Annotation confidence Not enough data
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Genome context
scaffold_14906: 3026549-3026639 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from dgr-mir-92b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dgr-miR-92b

Accession MIMAT0008624
Description Drosophila grimshawi dgr-miR-92b mature miRNA
Sequence 57 - AAUUGCACUAGUCCCGGCCUGC - 78
Evidence not_experimental

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218