miRBase entry: dgr-mir-275

Stem-loop dgr-mir-275


Accession
MI0009179
Description
Drosophila grimshawi dgr-mir-275 precursor miRNA
Gene family
MIPF0000187; mir-275


Sequence

gucguuuaccgcgcgcgcuaaucagugaccggggcugguuuugauuaucccacagUCAGGUACCUGAAGUAGCGCGCGugguggccagacgc
(((..(((((((((((((((.((((..(((..(((((...............))))).)))..))))..)))))))))))))))...)))..

Structure
--   -gu               -a    ug   gg     guuuug 
  guc   uuaccgcgcgcgcua  ucag  acc  ggcug      a
  |||   |||||||||||||||  ||||  |||  |||||      u
  cag   ggugguGCGCGCGAU  AGUC  UGG  CUgac      u
cg   acc               GA    CA   -A     acccua 


Annotation confidence Not enough data
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Genome context
scaffold_15126: 5008401-5008492 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from dgr-mir-275
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dgr-miR-275

Accession MIMAT0008625
Description Drosophila grimshawi dgr-miR-275 mature miRNA
Sequence 56 - UCAGGUACCUGAAGUAGCGCGCG - 78
Evidence not_experimental

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218