miRBase entry: dmo-mir-125

Stem-loop dmo-mir-125


Accession
MI0009222
Description
Drosophila mojavensis dmo-mir-125 precursor miRNA
Gene family
MIPF0000033; mir-10


Sequence

gacaugugcaaauguuuguauggcugauUCCCUGAGACCCUAACUUGUGAcuuuuaauaccaguuucacaaguuuugaucuccgguauuggacgcaaacuugcugauguu
(((((..((((..((((((....(((((..((.((((.(..(((((((((...............)))))))))..).)))).)).)))))..))))))))))..)))))

Structure
     gu    au      augg     UC  U    C CU         cuuuua 
gacau  gcaa  guuugu    cugau  CC GAGA C  AACUUGUGA      a
|||||  ||||  ||||||    |||||  || |||| |  |||||||||      u
uugua  cguu  caaacg    gguua  gg cucu g  uugaacacu      a
     gu    --      --ca     -u  c    a uu         uugacc 


Annotation confidence Not enough data
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Genome context
scaffold_6500: 6184277-6184386 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from dmo-mir-125
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dmo-miR-125

Accession MIMAT0008669
Description Drosophila mojavensis dmo-miR-125 mature miRNA
Sequence 29 - UCCCUGAGACCCUAACUUGUGA - 50
Evidence not_experimental

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218