miRBase entry: dmo-mir-288

Stem-loop dmo-mir-288


Accession
MI0009228
Description
Drosophila mojavensis dmo-mir-288 precursor miRNA
Gene family
MIPF0000223; mir-288


Sequence

ggacgcgucguaauuagcugugcacagcguugcuggcgauaauuaaugacguuggucacguuggUUUCAUGUCGAUUUCAUUUCAUGacacggccg
((.((.(((((((((.((((.((.((((((.(((((((...........))))))).))))))))..)).)).)))).......))))).)).)).

Structure
-  a  c     -------    a  -  -u  a      u       auaa 
 gg cg gucgu       aauu gc ug  gc cagcgu gcuggcg    u
 || || |||||       |||| || ||  || |||||| |||||||    u
 cc gc caGUA       UUAG UG AC  Ug guugca ugguugc    a
g  g  a     CUUUACU    C  U  UU  -      c       agua 


Annotation confidence Not enough data
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Genome context
scaffold_6500: 24709800-24709895 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from dmo-mir-288
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dmo-miR-288

Accession MIMAT0008675
Description Drosophila mojavensis dmo-miR-288 mature miRNA
Sequence 65 - UUUCAUGUCGAUUUCAUUUCAUG - 87
Evidence not_experimental

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218