miRBase entry: dmo-mir-9c

Stem-loop dmo-mir-9c


Accession
MI0009236
Description
Drosophila mojavensis dmo-mir-9c precursor miRNA
Gene family
MIPF0000014; mir-9


Sequence

auuuuugcuguuUCUUUGGUAUUCUAGCUGUAGAuuguuuucacauauuguaucaucuaaagcuuuuauaccaaagcuccagcuuaaau
((((..((((...(((((((((...((((.(((((.((.............)).))))).))))...)))))))))...))))..))))

Structure
    uu    uuU         UCU    G     u  uuuca 
auuu  gcug   CUUUGGUAU   AGCU UAGAu gu     c
||||  ||||   |||||||||   |||| ||||| ||     a
uaaa  cgac   gaaaccaua   ucga aucua ua     u
    uu    cuc         uuu    a     c  uguua 


Annotation confidence Not enough data
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Genome context
scaffold_6500: 7201345-7201433 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from dmo-mir-9c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dmo-miR-9c

Accession MIMAT0008683
Description Drosophila mojavensis dmo-miR-9c mature miRNA
Sequence 13 - UCUUUGGUAUUCUAGCUGUAGA - 34
Evidence not_experimental

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218