miRBase entry: dpe-mir-5

Stem-loop dpe-mir-5

Accession

MI0009268

Description

Drosophila persimilis dpe-mir-5 precursor miRNA

Gene family

MIPF0000309; mir-5

Sequence

gcuaAAAGGAACGAUCGUUGUGAUAUGcguuaauucaccguuacauaucacagugauuuuccuuuauagcgc
(((((((((((.(((((((((((((((...((((.....)))))))))))))))))))))))))).))))..

Structure

--    -       C               cgu    u 
  gcua AAAGGAA GAUCGUUGUGAUAUG   uaau c
  |||| ||||||| |||||||||||||||   |||| a
  cgau uuuccuu uuagugacacuauac   auug c
cg    a       -               ---    c

Annotation confidence Not enough data

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Genome context

scaffold_2: 8906361-8906432 [+]

Clustered miRNAs

7 other miRNAs are < 10 kb from dpe-mir-5

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dpe-miR-5

Accession	MIMAT0008714
Description	Drosophila persimilis dpe-miR-5 mature miRNA
Sequence	5 - AAAGGAACGAUCGUUGUGAUAUG - 27
Evidence	not_experimental

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218