miRBase entry: dpe-mir-281-1

Stem-loop dpe-mir-281-1

Accession

MI0009281

Description

Drosophila persimilis dpe-mir-281-1 precursor miRNA

Gene family

MIPF0000087; mir-46

Sequence

cgaauaggugaauaAAGAGAGCUGUCCGUCGACAGUcaacguaccaauuuaauacUGUCAUGGAAUUGCUCUCUUUGUauaauauucg
((((((.....(((((((((((..(((((.((((((.................)))))))))))...)))))))))))....))))))

Structure

      gguga           -UG     C      caacgua 
cgaaua     auaAAGAGAGC   UCCGU GACAGU       c
||||||     |||||||||||   ||||| ||||||       c
gcuuau     UGUUUCUCUCG   AGGUA CUGUca       a
      -aaua           UUA     -      uaauuua

Annotation confidence Not enough data

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Genome context

scaffold_2: 605321-605408 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from dpe-mir-281-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dpe-miR-281-1-5p

Accession	MIMAT0008727
Description	Drosophila persimilis dpe-miR-281-1-5p mature miRNA
Sequence	15 - AAGAGAGCUGUCCGUCGACAGU - 36
Evidence	not_experimental

Mature dpe-miR-281-3p

Accession	MIMAT0008728
Description	Drosophila persimilis dpe-miR-281-3p mature miRNA
Sequence	56 - UGUCAUGGAAUUGCUCUCUUUGU - 78
Evidence	not_experimental

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218